Price Lab Resources

Title Description Categories Tags
AUREA: An open-source software system for accurate and user-friendly identification of relative expression molecular signatures

AUREA presents relative expression analysis algorithms in GUI form and with an API.

Analysis Software Transcriptomic, API, Desktop Application, Linux, OS X, Windows, Open Source, Analysis, Integration, C++, Python
Differential Rank Conservation (DIRAC)

 

Analysis Software Transcriptomic, Desktop Application, Linux, OS X, Windows, Matlab
GBM Blood Biomarker Analysis

Ipython notebooks containing analysis of GBM blood biomarkers.

Information Resource
Gemini

 

Analysis Software Metabolomic, Transcriptomic, Desktop Application, Analysis, Integration, Modeling, Matlab
Genetic Co-Occurrence Network across Sequenced Microbes

We have developed a new...

Information Resource Data Source, Transcriptomic, Database, Public Resource
Honeybee Transcriptional Regulatory Network

 

Information Resource Transcriptomic, Database, Public Resource
ISSAC: Identification of Structured Signatures and Classifiers

ISSAC: Identification of Structured Signatures and Classifiers

Analysis Software Transcriptomic, Desktop Application, Linux, OS X, Windows, Open Source, Analysis, Integration, Statistical, Matlab
ITEP: Integrated Toolkit for Exploration of Pan-genomes

ITEP, the Integrated Toolkit for Exploration of microbial Pan-genomes, is a suite of scripts and...

Analysis Software Metabolomic, Proteins, Availability, Open Source, Purpose, Analysis, Integration, Modeling, Python
Measuring the effect of inter-study variability on estimating prediction error

Measuring the effect of inter-study variability on estimating prediction error

Analysis Software Transcriptomic, Desktop Application, Linux, OS X, Windows, Public Resource, Analysis, Integration, Statistical, Matlab
Methanogens Information Resource Metabolomic
Methanosarcina acetivorans reconstruction

In collaboration with Bill Metcalf's lab at the University of...

Information Resource Metabolomic, Database, Public Resource, Integration, Modeling
Probabilistic Regulation of Metabolism (PROM)

Transcriptional regulation plays...

Analysis Software Desktop Application, Linux, OS X, Windows, Open Source, Modeling, Matlab
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis

The growth of next-generation sequencing data now exceeds the growth rate of storage capacity....

Analysis Software Transcriptomic, Linux, Public Resource, Open Source, Analysis, C++
Tissue Specific > Encyclopedia of Metabolism (TSEM)

The Price lab is building cell-...

Information Resource Metabolomic, Transcriptomic, Desktop Application, Database, Windows, Public Resource, Open Source, Analysis
Top-scoring 'N' algorithm

We have developed a new general formulation of the relative...

Analysis Software Transcriptomic, Desktop Application, Linux, Open Source, Analysis, C++, Matlab
Top-Scoring Pair and Top-Scoring Triple on the Graphics Processing Unit (GPU)

We have implemented the relative expression classification...

Analysis Software Transcriptomic, API, Desktop Application, Linux, Analysis, C++, Matlab
Updated Methanosarcina barkeri reconstruction

 

Information Resource Data Source, Metabolomic